MmuEX0018734 @ mm9
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58313414-58360359:-
Coord C1 exon
chr18:58360264-58360359
Coord A exon
chr18:58349895-58349990
Coord C2 exon
chr18:58313414-58313611
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATGTGTCTGCAGCTG
3' ss Score
9.13
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTCAGCAGTGTAGCGTGAGGTGCATGAACGGCGGGACCTGTGCAGACGACCACTGTCAGTGCCAGAAGGGATACATCGGAACTTACTGTGGACAAC
Seq A exon
CTGTCTGTGAGAATGGATGCCAGAACGGGGGGCGTTGTATCGGCCCTAACCGCTGTGCTTGCGTTTATGGATTCACCGGGCCGCAGTGCGAAAGAG
Seq C2 exon
ATTACAGGACAGGCCCGTGTTTCACTCAAGTCAATAATCAGATGTGCCAGGGGCAGCTGACAGGCATCGTCTGCACAAAGACACTGTGTTGTGCCACCATCGGACGAGCCTGGGGCCATCCTTGTGAGATGTGTCCAGCCCAGCCTCAGCCCTGCCGCCGGGGCTTCATTCCTAACATCCGCACTGGAGCATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCAGTGCCAGAAGGGAT
R:
CACATCTCACAAGGATGGCCC
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: