DreEX6087591 @ danRer10
Exon Skipping
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16495338-16501548:-
Coord C1 exon
chr10:16501453-16501548
Coord A exon
chr10:16499329-16499424
Coord C2 exon
chr10:16495338-16495535
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCAGGTGGTTTTGTTTCAGCTG
3' ss Score
5.91
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
CCAAACAATGCAATATAAGGTGTATGAATGGAGGAGTGTGTGAAGATGACTATTGCCAGTGTCCAAAGGGATATACAGGAAGCTTTTGTGGACAAC
Seq A exon
CTGTCTGTGAAAAAAACTGTCAGAATGGTGGACACTGCATTGGACCGAACAGATGCGCGTGTGGATACGGCTTCACTGGACCACAGTGTGAGAGAG
Seq C2 exon
ACTACCGGACAGGCCCATGCTTCATCCAAGTGCACAGCAGGAAGTGTGCAGGTCAGAGCAGTGAATTTGTTTGCAGTAAGGCCTTGTGCTGTGCCACAGTGGGTCAAGCGTGGGGTCACTCGTGCGAGCAGTGCCCACCTATCAGCTCGCCCTGCACCAGAGGGTTCATCCCAAACACCCGCACAGGAGCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896-'4-7,'4-5,5-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=78.8)
A:
NO
C2:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTATGAATGGAGGAGTGTGT
R:
AGCACAAGGCCTTACTGCAAA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]