BtaEX6038463 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18070542-18072829:-
Coord C1 exon
chr7:18072734-18072829
Coord A exon
chr7:18070779-18070976
Coord C2 exon
chr7:18070542-18070667
Length
198 bp
Sequences
Splice sites
3' ss Seq
CACATCCATCTGCCCTGCAGACT
3' ss Score
7.88
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTGTCTGTGACCACGGCTGCCACAACGGGGGCCGCTGCATTGGGCCAAACCACTGTGCCTGTGTGTACGGCTTCATGGGGCCTCAGTGTGAGAGAG
Seq A exon
ACTACCGGACGGGGCCCTGCTTTGGTCGAGTGGGCCCTGAGGGGTGCCAGCACCAGCTGACAGGCCTCATCTGCACCAAGGCGCTCTGCTGTGCCACTGTGGGCCGGGCCTGGGGCTTCCCATGTGAGCTCTGCCCAGCTCAGCCACATCCCTGCCGCCGGGGCTTCATCCCCAATATTAACACGGGGGCCTGCCAAG
Seq C2 exon
ATGTGGATGAGTGCCAGGCTGTGCCAGGCCTGTGCCAGGGGGGCAGCTGTGTCAACACTGTGGGTTCCTTTGAGTGCCGCTGTCCCACTGGACACCGGCTCAGTGAGAACAGTGCCAAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTGTGACCACGGCTG
R:
TCACACTTGGCACTGTTCTCAC
Band lengths:
220-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]