RnoEX6018853 @ rn6
Exon Skipping
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117669778-117726694:-
Coord C1 exon
chr3:117726599-117726694
Coord A exon
chr3:117672614-117672811
Coord C2 exon
chr3:117669778-117669903
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTCTTATTCTTTACTTTCAGATT
3' ss Score
11.13
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CTGTCTGTGAAAGTGGCTGTCTCAATGGAGGGAGGTGCGTGGCCCCAAATCGGTGTGCATGCACATACGGCTTTACGGGACCCCAGTGTGAAAGAG
Seq A exon
ATTACAGAACAGGCCCGTGTTTTACTGTGGTAAGCAACCAGATGTGCCAGGGACAGCTCAGCGGGATTGTCTGCACCAAAACACTCTGCTGTGCCACAGTGGGCCGAGCCTGGGGCCACCCCTGCGAGATGTGTCCTGCCCAGCCTCACCCCTGCCGCCGCGGCTTCATTCCCAACATCCGCACCGGAGCTTGTCAAG
Seq C2 exon
ATGTGGATGAATGTCAGGCTATCCCGGGGCTGTGTCAAGGAGGAAATTGCATTAATACCGTTGGATCTTTTGAGTGCAAATGCCCCGCTGGACACAAATTTAATGAAGTGTCCCAAAAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302-'9-10,'9-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTGAAAGTGGCTGTCT
R:
CTTCACATTTTTGGGACACTTCA
Band lengths:
221-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]