BtaEX6053945 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:61931072-62003607:+
Coord C1 exon
chr10:61931072-61931167
Coord A exon
chr10:61999991-62000188
Coord C2 exon
chr10:62003482-62003607
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTTTTTATTTTCAGATT
3' ss Score
11.82
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CCGTCTGTGAAAGTGGCTGTCTTAACGGAGGCAGGTGCGTGGCCCCGAATCGATGTGCGTGCACTTACGGCTTTACTGGACCCCAGTGTGAAAGAG
Seq A exon
ATTACAGGACAGGTCCATGTTTTACTGTGATCAGCAACCAGATGTGCCAGGGACAGCTCAGCGGGATTGTCTGCACGAAAACGCTCTGCTGTGCCACGGTCGGCCGTGCCTGGGGCCACCCCTGTGAGATGTGTCCCGCCCAGCCCCACCCCTGTCGCCGCGGCTTCATTCCAAATATCCGCACAGGAGCTTGTCAAG
Seq C2 exon
ATGTGGACGAATGCCAGGCCATCCCTGGGCTCTGTCAAGGAGGAAATTGCATTAATACTGTTGGGTCTTTTGAGTGCAAATGCCCTGCTGGACACAAATTTAATGAAGTGTCACAAAAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGTGAAAGTGGCTGTCT
R:
CTTCACATTTTTGTGACACTTCATT
Band lengths:
221-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]