GgaEX6007873 @ galGal3
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11779774-11813624:-
Coord C1 exon
chr10:11813529-11813624
Coord A exon
chr10:11783211-11783408
Coord C2 exon
chr10:11779774-11779899
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTATCTTTGAAACAGATT
3' ss Score
7.93
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTGTTTGTGAAAATGGATGTCTAAATGGAGGAAGATGTGTTGCCCCAAACCGATGTGCATGCACATATGGATTTACTGGACCTCAGTGTGAAAGAG
Seq A exon
ATTACAGGACTGGCCCTTGCTTCACTTTGGTAACGAACCAGATGTGCCAGGGACAGCTCAGTGGAATAGTCTGCACAAAAACCCTTTGCTGTGCAACTGTTGGGAGAGCATGGGGCCACCCCTGTGAAATGTGTCCTGCCCAGCCGCATCCCTGTCGACGAGGCTTCATTCCAAACATTCGAACTGGGGCCTGTCAAG
Seq C2 exon
ATGTGGATGAATGCCAAGCTATCCCTGGGATCTGTCAAGGGGGAAATTGCATTAATACTGTTGGATCTTTTGAGTGCAAATGCCCAGCTGGACACAAGTTTAATGAAGTGACACAAAAATGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAAAATGGATGTCTAAATGGA
R:
CATCGCATTTTTGTGTCACTTCA
Band lengths:
218-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]