GgaEX6027648 @ galGal4
Exon Skipping
Gene
ENSGALG00000000327 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr28:307160-331408:+
Coord C1 exon
chr28:307160-307255
Coord A exon
chr28:328931-329128
Coord C2 exon
chr28:331283-331408
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTATTTTCCCTCAGACT
3' ss Score
10.69
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTGTCTGTGAAAATAGCTGTCAGAATGGAGGTCGCTGCATTGGACCAAACCGTTGTGCATGTGTATATGGATTTACCGGCCCCCAGTGTGAGAGAG
Seq A exon
ACTATCGTACTGGCCCCTGCTTTAGCCAAGTAAATAACCAGATGTGTCAGGGACAACTCAGCGGGATCGTCTGTACCAAGACCATGTGTTGTGCCACCATTGGACGGGCCTGGGGTCACCCGTGCGAGATGTGCCCTGCCCAGCCTCACCCTTGCCGACGAGGTTTCATTCCCAACATTCGTACTGGAGCCTGCCAAG
Seq C2 exon
ATGTGGATGAATGTCAAGCCATTCCTGGACTCTGCCAGGGTGGTAACTGCATCAACACAGTGGGTTCTTATGAGTGCAAATGCCCTGCAGGACACAAGCAGAGCGAGACCAGCCACAGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTGAAAATAGCTGTCAGA
R:
TTCACATCTGTGGCTGGTCTC
Band lengths:
220-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]