MmuEX0018735 @ mm10
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58148991-58190336:-
Coord C1 exon
chr18:58190241-58190336
Coord A exon
chr18:58153760-58153957
Coord C2 exon
chr18:58148991-58149116
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCGTTCTCATTCCAGATT
3' ss Score
11.49
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGTCTGTGAGAATGGATGCCAGAACGGGGGGCGTTGTATCGGCCCTAACCGCTGTGCTTGCGTTTATGGATTCACCGGGCCGCAGTGCGAAAGAG
Seq A exon
ATTACAGGACAGGCCCGTGTTTCACTCAAGTCAATAATCAGATGTGCCAGGGGCAGCTGACAGGCATCGTCTGCACAAAGACACTGTGTTGTGCCACCATCGGACGAGCCTGGGGCCATCCTTGTGAGATGTGTCCAGCCCAGCCTCAGCCCTGCCGCCGGGGCTTCATTCCTAACATCCGCACTGGAGCATGTCAAG
Seq C2 exon
ATGTTGACGAATGCCAGGCGATTCCAGGACTGTGCCAGGGGGGAAACTGTATCAACACAGTGGGCTCGTTTGAGTGCAGATGCCCTGCTGGTCACAAGCAGAGTGAAACCACACAGAAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'6-9,'6-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTGAGAATGGATGCCA
R:
CACATTTCTGTGTGGTTTCACTCTG
Band lengths:
218-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types