BtaEX6039568 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26711109-26767268:+
Coord C1 exon
chr7:26711109-26711204
Coord A exon
chr7:26756130-26756327
Coord C2 exon
chr7:26767143-26767268
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCTTTCACATTCCAGATT
3' ss Score
9.46
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGTCTGTGAAAATGGATGTCAGAATGGTGGACGTTGCATCGGACCTAACCGCTGTGCCTGTGTTTATGGATTCACTGGCCCGCAGTGTGAAAGAG
Seq A exon
ATTACAGGACAGGTCCGTGTTTCACTCAGGTCAACAACCAGATGTGCCAGGGGCAGCTCACAGGCATCGTGTGTACAAAGACTCTGTGCTGCGCCACCACTGGGCGGGCCTGGGGTCACCCCTGCGAGATGTGCCCAGCCCAGCCTCAGCCCTGCCGACGGGGCTTCATCCCCAACATACGCACTGGAGCTTGCCAAG
Seq C2 exon
ATGTTGATGAATGCCAGGCTATTCCTGGGATATGCCAGGGAGGAAACTGTATCAATACAGTGGGCTCTTTTGAATGCAAATGTCCTGCAGGTCACAAGCAGAGCGAAACTACTCAGAAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTGTGAAAATGGATGTCAGA
R:
ACATTTCTGAGTAGTTTCGCTCTGC
Band lengths:
218-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]