GgaEX7004791 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56699568-56742248:-
Coord C1 exon
chrZ:56742153-56742248
Coord A exon
chrZ:56710576-56710773
Coord C2 exon
chrZ:56699568-56699693
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGATGTTTCTTCTTTTCCAGATT
3' ss Score
10.74
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CTGTCTGTGAAAAAGGCTGCCAGAATGGAGGACGGTGTATTGGACCTAATCGCTGTGCATGTGTCTACGGGTTTACTGGTCCTCAGTGTGAAAGAG
Seq A exon
ATTACAGAACAGGTCCTTGTTTCACACAAGTTAATAACCAGATGTGTCAAGGCCAGCTAACTGGAATTGTTTGCACGAAAACCCTCTGTTGTGCAACCATTGGGCGTGCATGGGGTCACCCCTGTGAAATGTGCCCTGCTCAGCCTCAGCCATGTCGTCGCGGTTTCATCCCTAATATTCGTACTGGAGCATGTCAAG
Seq C2 exon
ATGTTGATGAATGTCAGGCTATCCCTGGAGTCTGCCAAGGAGGAAACTGCATTAATACAGTAGGTTCCTATGAGTGCAAGTGTCCTGCTGGTCACAGGCAGAATGAGGCAACTCAAAAATGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTGTGAAAAAGGCTGCC
R:
ACATTTTTGAGTTGCCTCATTCTGC
Band lengths:
218-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]