DreEX0032246 @ danRer10
Exon Skipping
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16490532-16499424:-
Coord C1 exon
chr10:16499329-16499424
Coord A exon
chr10:16495338-16495535
Coord C2 exon
chr10:16490532-16490657
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTATGTAAATCGCAGACT
3' ss Score
6.36
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTGTCTGTGAAAAAAACTGTCAGAATGGTGGACACTGCATTGGACCGAACAGATGCGCGTGTGGATACGGCTTCACTGGACCACAGTGTGAGAGAG
Seq A exon
ACTACCGGACAGGCCCATGCTTCATCCAAGTGCACAGCAGGAAGTGTGCAGGTCAGAGCAGTGAATTTGTTTGCAGTAAGGCCTTGTGCTGTGCCACAGTGGGTCAAGCGTGGGGTCACTCGTGCGAGCAGTGCCCACCTATCAGCTCGCCCTGCACCAGAGGGTTCATCCCAAACACCCGCACAGGAGCCTGCCAAG
Seq C2 exon
ATGTTGATGAATGCAAGGTTGTCCCCGATCTGTGTAAAGGAGGAAGATGCATCAACACATTGGGTTCATATCAGTGCACGTGTCCTGTCGGTTACCAACAGCATGTGAGCATTTTGAAGTGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896-'5-8,'5-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF062476=Plasmod_Pvs28=PU(26.8=86.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGTCAGAATGGTGGACACT
R:
CCTCGCACTTCAAAATGCTCAC
Band lengths:
210-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]