BtaEX6038488 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18041611-18043209:-
Coord C1 exon
chr7:18043087-18043209
Coord A exon
chr7:18042632-18042793
Coord C2 exon
chr7:18041611-18041679
Length
162 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTTCTGCCTGTTTAGATA
3' ss Score
9.85
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATGTGAATGAGTGTGCAGACCCTGTGAACTGCATCAACGGCCTGTGTGTCAACACCCCCGGCAGCTACCTCTGCAACTGCCCGCAGGATTTTGAGCTGAATCCCAGCGGCGTGGGCTGCGTGG
Seq A exon
ATACCCGGGTCGGGAACTGTTTCCTGGACACACAGCATCGAGGGGACGGTGGCATTTCCTGCAGTGCGGAGATCGGGGTTGGCGTCACCCGGGCGTCCTGCTGTTGCTCCCTGGGTCGGGCTTGGGGCAACCCTTGTGAGCTGTGCCCGCTGGCCAACACCA
Seq C2 exon
CTGAGTACAGAACCCTGTGCCCAGGGGGTGAGGGCTTCCGGCCTAATTCCATCACTGTCATCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'37-40,'37-39,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=100.0)
A:
PF0764510=EGF_CA=PD(0.1=0.0),PF0068312=TB=PU(85.7=65.5)
C2:
PF0068312=TB=PD(11.9=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTGTGCAGACCCTGTGA
R:
CTTCCAGGATGACAGTGATGGA
Band lengths:
186-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]