GgaEX0000269 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:348760-349870:+
Coord C1 exon
chr28:348760-348882
Coord A exon
chr28:349136-349297
Coord C2 exon
chr28:349802-349870
Length
162 bp
Sequences
Splice sites
3' ss Seq
ACAGTGCTTTCTTTGTGCAGATA
3' ss Score
8.87
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
ATATCAACGAATGTGCAGACCCCGTGAACTGTATCAACGGCCTGTGCGTCAACACTCCGGGCAGCTACCTGTGCAACTGTCCACAAGACTTTGAGTTGAACCCCACTGGTGTGGGCTGTGTGG
Seq A exon
ATACCCGTGTTGGGAACTGCTTCCTGGACACCCAGGATCGTGGAGATGGGGGGATCTCCTGCAGTGCAGAAATTGGAGTTGGTGTCACTCGGGCATCCTGCTGCTGCTCACTGGGTCGTGCATGGGGCAACCCCTGCGAGCTTTGTCCTCCAGCCAACACGA
Seq C2 exon
CCGAGTACAAGACCCTGTGCCCTGGAGGAGAAGGTTTCCGGCCCAACCCCATCACTGTCATCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(95.3=97.6)
A:
PF0764510=EGF_CA=PD(2.3=1.8),PF0068312=TB=PU(85.7=65.5)
C2:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACGAATGTGCAGACCCC
R:
TCCAGGATGACAGTGATGGGG
Band lengths:
188-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]