DreEX6097166 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4100503-4103027:-
Coord C1 exon
chr22:4102905-4103027
Coord A exon
chr22:4100845-4101006
Coord C2 exon
chr22:4100503-4100571
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTTCTATTTCCTGTGTGCAGACA
3' ss Score
7.98
5' ss Seq
CCAGTACGA
5' ss Score
3.47
Exon sequences
Seq C1 exon
ACATCAACGAGTGTTTCGACCCGGTGAACTGCATCAACGGTGTGTGTGTGAATCTGCCCGGCAGCTACCTGTGCAACTGTCCTCCAGATTTTGAGCTGAACCCGTCTGGTGTGGGCTGTGTGG
Seq A exon
ACACGCGTGTGGGCAACTGTTTCCTGGATACGTTGGACCGTGGCGATGGCGGGATCTCCTGCAGTGCTGAGATCGGAGTGGGCGTGACCCGCGCATCCTGCTGCTGCTCGCTGGGCGGAGCCTGGGGAAACCCCTGTGAACTCTGCCCATCCGTCAACTCCA
Seq C2 exon
CCGAGTATAAGACTCTGTGTCCCGGTGGAGAAGGCTTCAGGCCGAACCCCATCACCGTCATCCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=100.0)
A:
PF0764510=EGF_CA=PD(0.1=0.0),PF0068312=TB=PU(85.7=65.5)
C2:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTTTCGACCCGGTGAAC
R:
AGGATGACGGTGATGGGGTTC
Band lengths:
179-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]