BtaEX6039516 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26871522-26875142:+
Coord C1 exon
chr7:26871522-26871644
Coord A exon
chr7:26873965-26874126
Coord C2 exon
chr7:26875074-26875142
Length
162 bp
Sequences
Splice sites
3' ss Seq
ACTCCTGTGTTGCTCTGCAGACA
3' ss Score
10.14
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATATTGATGAGTGTGCAGACCCAATAAACTGCGTGAACGGCCTGTGTGTCAACACTCCTGGTCGCTATGAGTGTAACTGTCCACCCGATTTCCAGCTGAACCCCACCGGTGTGGGGTGTGTCG
Seq A exon
ACAACCGCGTGGGCAACTGCTACCTGAAGTTCGGTCCTCGGGGCGACGGAAGCCTGTCCTGCAACACTGAGATTGGGGTGGGCGTCAGCCGCTCCTCCTGCTGCTGCTCTCTGGGCAAGGCCTGGGGGAACCCCTGCGAGACCTGCCCCCCTGTCAATAGCA
Seq C2 exon
CTGAATATTACACTTTGTGTCCTGGAGGGGAAGGCTTCAGACCTAACCCCATTACAATCATCTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'73-74,'73-73,74-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=97.6)
A:
PF0068312=TB=PU(85.7=65.5)
C2:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGTGTGCAGACCCAA
R:
CTAAGATGATTGTAATGGGGTTAGGT
Band lengths:
186-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]