GgaEX1066044 @ galGal3
Exon Skipping
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55682200-55689303:-
Coord C1 exon
chrZ:55689181-55689303
Coord A exon
chrZ:55683027-55683188
Coord C2 exon
chrZ:55682200-55682268
Length
162 bp
Sequences
Splice sites
3' ss Seq
CATATGTGCTTTATATATAGATA
3' ss Score
6.2
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
Exon sequences
Seq C1 exon
ATATTGATGAATGTGCTGATCCCATTAACTGTGTTAATGGTCTTTGTGTAAATACTCCTGGAAGATACGAATGTAATTGTCCTCCAGATTTCCAGCTGAATCCTACTGGAGTGGGTTGTGTGG
Seq A exon
ATAATCGTGTTGGCAATTGCTACCTGAAGTATGGACCACGAGGGGATGGAAGCCTATCCTGCAATACTGAAATTGGAGTTGGAGTCAGTCGTTCCTCATGCTGCTGCTCTCTGGGAAAGGCTTGGGGAAACCCATGTGAAACATGTCCCCCTGTAAATAGCA
Seq C2 exon
CGGAGTACAATACTCTTTGTCCAGGAGGAGAAGGATTCAGACCAAATCCCATTACTATTATTTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'43-48,'43-47,44-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=97.6)
A:
PF0068312=TB=PU(85.7=65.5)
C2:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAATGTGCTGATCCCA
R:
AATAGTAATGGGATTTGGTCTGAATC
Band lengths:
179-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]