BtaEX6038696 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19227712-19228605:+
Coord C1 exon
chr7:19227712-19227783
Coord A exon
chr7:19228383-19228427
Coord C2 exon
chr7:19228498-19228605
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCGGTTCCTCCATAGGCA
3' ss Score
10.5
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AAAGGTGGTGGTGCCCTTCTGCACTCCGTCAAGGCCAAGACCCAACCAGCTGTCAGGAACATGTACCGCTCG
Seq A exon
GCAAAGAGCGGCTTGAAGGGTATGCAGAGTCTTCTCATGTACAAG
Seq C2 exon
GAAGGGGACTCTGGCCTGCAGAGGGGGGGCTCCTTGAGGGCCCCTTCCCTCACCAGCCGCTCAGATCGCCTGCAGCAGCGCCTGCCTATCACCCAGCACTTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.133 C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACCCAACCAGCTGTCAG
R:
CCAAAGTGCTGGGTGATAGGC
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]