MmuEX0014244 @ mm9
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57207016-57209607:-
Coord C1 exon
chr17:57209536-57209607
Coord A exon
chr17:57207212-57207256
Coord C2 exon
chr17:57207016-57207123
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTGTCGGGTCATCACCTAGGCA
3' ss Score
5.81
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAAGGTAGCGATGCCCTTCTGCATTCAATGAAGACAAAAACCCAACCAGCTGTCAGGAACATGTACCGATCG
Seq A exon
GCAAAGAGTGGCTTGAAGGGTATGCAGAACCTGCTCACGATTAAG
Seq C2 exon
GATGGAGACTCTGGCCTGCAGAGGGGGGGCTCCCTGAGAACCCCAAGCCTCACCAGCCGCTCTGATCGTCTGCAACAGCGCCTGCCTATTAGCCAGCACTTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.467 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCCAACCAGCTGTCAGG
R:
TCCAAAGTGCTGGCTAATAGGC
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: