HsaEX0019122 @ hg38
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6468846-6470366:-
Coord C1 exon
chr19:6470295-6470366
Coord A exon
chr19:6469596-6469640
Coord C2 exon
chr19:6468846-6468953
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCACTCCTTTATAGGCC
3' ss Score
9.55
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAAGGTGGTGGCGCCCTCCTGCACTCAGTCAAGGCCAAGACCCAACCAGCCGTCAAGAACATGTACCGCTCG
Seq A exon
GCCAAGAGTGGCTTGAAGGGGGTGCAGAGCCTTCTAATGTATAAG
Seq C2 exon
GATGGGGACTCTGTCCTGCAGAGGGGGGGCTCTCTGAGGGCCCCAGCCCTCCCCAGCCGCTCAGACCGCCTGCAGCAACGCCTCCCAATCACTCAGCACTTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744_MULTIEX2-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.000 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAGTCAAGGCCAAGACC
R:
CTGAGTGATTGGGAGGCGTTG
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development