BtaEX6039494 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26905484-26908132:+
Coord C1 exon
chr7:26905484-26905600
Coord A exon
chr7:26906202-26906330
Coord C2 exon
chr7:26908013-26908132
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTTGTCCTCTGCTAGACA
3' ss Score
7.83
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACCTTGATGAATGTCAAACCAAACAGCACAATTGCCAGTTCCTGTGTGTCAACACTCTGGGAGGTTTTACCTGTAAATGTCCACCTGGTTTCACACAGCATCACACTGCTTGTATTG
Seq A exon
ACAACAATGAATGTGGGTCCCAGCCTTCACTTTGTGGAGCAAAGGGAATCTGTCAAAACACCCCTGGAAGTTTCAGCTGCGAATGCCAAAGAGGGTTCTCTCTTGATGCTACTGGACTGAACTGTGAAG
Seq C2 exon
ATGTTGATGAATGTGATGGAAACCATAGGTGCCAGCATGGCTGCCAGAACATCCTGGGAGGCTATAGGTGTGGCTGCCCGCAAGGGTATATTCAGCATTACCAGTGGAATCAGTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'98-98,'98-97,99-98=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAATGTCAAACCAAACAGCA
R:
CAACACACTGATTCCACTGGT
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]