DreEX0004239 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4074519-4076635:-
Coord C1 exon
chr22:4076519-4076635
Coord A exon
chr22:4076282-4076410
Coord C2 exon
chr22:4074519-4074638
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTATGCTTCATCTCGTAGACA
3' ss Score
8.29
5' ss Seq
ATGGTTGGT
5' ss Score
5.29
Exon sequences
Seq C1 exon
ATTTGGACGAGTGCTCAACCAAGCAGCACAACTGTCAGTTCCTGTGCGTCAACACGATCGGTGGTTTCACCTGTAAATGCCCCTCGGGCTTCACACAGCACCAGACGGCCTGCATAG
Seq A exon
ACAACAACGAATGCAGCAATCAGCCGAACATATGCGGGTCCCGTGCCTCCTGCCTCAACAGTCCCGGCAGCTTCAACTGCGAGTGCCAGAAGGGCTTCTCTCTGGATGCCACGGGACTCAACTGTGATG
Seq C2 exon
ACGTCGATGAATGCGGTGGAAACCACCGGTGCCAACATGGCTGCCAAAACATGATGGGAGGATATCGCTGCGGCTGCCCACAGGGTTACGTTCAACACTACCAATGGAACCAGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGACGAGTGCTCAACCAAG
R:
CCACACACTGGTTCCATTGGT
Band lengths:
235-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]