GgaEX1066034 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56595174-56597723:-
Coord C1 exon
chrZ:56597607-56597723
Coord A exon
chrZ:56596814-56596942
Coord C2 exon
chrZ:56595174-56595293
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTATGCTCTCTATTTTTAAGACA
3' ss Score
6.76
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
ATCTTGATGAATGTCAAACTAAACAACACAATTGTCAGTTTCTCTGTGTCAACACCCTTGGAGGCTTCACATGCAAATGTCCACCTGGTTTTACTCAACATCACACAGCTTGTATTG
Seq A exon
ACAACAATGAATGTGGTTCTCAGCCATCACTCTGTGGATCAAAAGGAATTTGCCAAAACACTCCTGGAAGTTTTACCTGTGAATGCCAAAGGGGATTTTCTCTGGATTCTACTGGATTAAACTGCGAAG
Seq C2 exon
ATGTGGATGAATGTGATGGAAATCACAGATGCCAGCATGGCTGTCAAAACATCCTAGGTGGATACAGATGTGGATGCCCACAAGGGTATATTCAGCATTACCAGTGGAATCAATGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGATGAATGTCAAACTAAACAACA
R:
AACACATTGATTCCACTGGTAATGC
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]