BtaEX6039509 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26882523-26883786:+
Coord C1 exon
chr7:26882523-26882648
Coord A exon
chr7:26882827-26882952
Coord C2 exon
chr7:26883661-26883786
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGGAATTGTTGCTCTTGCAGATA
3' ss Score
9.13
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACATTGATGAATGTAAAGAGATTCCAGGCATTTGTGCAAACGGTGTGTGCATTAACCAAATCGGCAGTTTCCGCTGTGAATGCCCCACGGGATTCAGCTACAATGATCTGCTGCTCGTCTGCGAAG
Seq A exon
ATATCGATGAGTGCAGCAATGGCGACAACCTGTGCCAGCGAAATGCAGACTGCATCAACAGCCCAGGCAGCTACCGGTGCGAGTGCGCTGCAGGTTTCAAACTTTCACCCAACGGAGCCTGCGTAG
Seq C2 exon
ATCGCAACGAGTGTTTAGAAATTCCTAATGTTTGCAGTCATGGCCTATGTGTGGATTTACAAGGAAGTTACCAGTGCATCTGCCACAATGGCTTTAAGGCTTCTCAGGACCAGACGATGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'80-81,'80-80,81-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTAAAGAGATTCCAGGCA
R:
CATGCACATCGTCTGGTCCTG
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]