GgaEX0021446 @ galGal3
Exon Skipping
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55672306-55673943:-
Coord C1 exon
chrZ:55673818-55673943
Coord A exon
chrZ:55672851-55672976
Coord C2 exon
chrZ:55672306-55672431
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTGACACTTGGTATTTCAGATA
3' ss Score
6.77
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ACATCGATGAATGTAAGGAAATCCCAGGAATCTGCGCAAATGGTGTTTGCATCAATCAGATCGGCAGCTTCCGCTGTGAATGCCCGACTGGATTCAGCTACAATGACCTGCTCTTGGTCTGTGAAG
Seq A exon
ATATTGACGAGTGCAGTAATGGAGACAATCTCTGTCAGAGAAATGCAGACTGTATCAACAGTCCTGGTAGTTACCGCTGTGAATGTGCTGCTGGTTTTAAACTTTCACCCAACGGTGCCTGTGTTG
Seq C2 exon
ATCGCAATGAGTGTCTGGAAATTCCTAATGTTTGCAGTCATGGTTTATGTGTGGACATGCAAGGAAGTTACCAATGCATATGTCACAATGGTTTTAAGGCATCTCAAGACCAGACTATGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'53-57,'53-56,54-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAAGGAAATCCCAGGAATCTGC
R:
CCATGCACATAGTCTGGTCTTGA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]