MmuEX6001715 @ mm9
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58207579-58208580:-
Coord C1 exon
chr18:58208455-58208580
Coord A exon
chr18:58208189-58208314
Coord C2 exon
chr18:58207579-58207704
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGGACCTGTCACTCTTGCAGACA
3' ss Score
8.95
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
ACATTGACGAGTGTAAAGAGATTCCGGGCATCTGTGCAAACGGTGTGTGCATTAACCAGATCGGTAGCTTCCGCTGCGAATGCCCCACAGGCTTCAGCTACAACGACCTGCTCTTGGTCTGTGAAG
Seq A exon
ACATCGATGAGTGTAGCAACGGCGACAATCTATGCCAACGAAACGCGGACTGTATCAACAGCCCCGGCAGCTACCGCTGCGAGTGTGCGGCCGGCTTCAAACTCTCCCCCAACGGGGCCTGTGTAG
Seq C2 exon
ATCGCAATGAATGCTTGGAAATTCCTAATGTTTGCAGTCATGGGTTGTGTGTTGATCTGCAAGGGAGTTACCAGTGTATCTGCAACAATGGCTTTAAGGCTTCTCAAGACCAGACCATGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF062476=Plasmod_Pvs28=PU(35.7=81.4),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF062476=Plasmod_Pvs28=FE(42.9=100),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=PD(20.4=46.5),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGTAAAGAGATTCCGGGC
R:
TGCACATGGTCTGGTCTTGAG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: