BtaEX6039924 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40260196-40260917:-
Coord C1 exon
chr7:40260813-40260917
Coord A exon
chr7:40260482-40260653
Coord C2 exon
chr7:40260196-40260407
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGAGCCTCCTCTCTCTGCAGACC
3' ss Score
9.29
5' ss Seq
CCGGTGCGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
TCTGCCGCACCAACCCGTGTCTCAACGGGGGCAGCTGCCTGCAGGCGGAGGGCCATCGCCTGTGCCGTTGTGCCCCTAGCTTCGCGGGACGTTTGTGCGATGTAG
Seq A exon
ACCTCAAGGCGAGTTGCTACGACGACCGCGACCGCGGTCTCAGCTACCGCGGCATGGCGGGGACTACGCTGTCCGGCGCACCCTGTCAGTCGTGGGCCTCCGAGGCCACCTACTGGAATGTGACCGCAGAGCAAGTGCTGAACTGGGGACTGGGCGACCACGCCTTCTGCCG
Seq C2 exon
CGCCTCCACCCCACCTCGTGGTTACAGGAACCCCGACAACGACACCCGCCCTTGGTGCTTCATTTGGAAAGGCGACCGACTGAGCTGGAATTACTGCCGCCTGGCACCGTGCCAGGCCGCAGCTGGGCACGAGCACTTCCCCTTGCCCTCGCCATCGGCTTTGCAGAAACCTGAGTCCACGACCCAGACCCCGCTTCCATCCCTGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872-'7-7,'7-6,8-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.1)
A:
PF0005113=Kringle=PU(57.8=89.7)
C2:
PF0005113=Kringle=PD(41.1=51.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGTGCCCCTAGCTTCG
R:
CTGAAGTCAGGGATGGAAGCG
Band lengths:
252-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]