MmuEX6058596 @ mm10
Exon Skipping
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55420975-55421629:-
Coord C1 exon
chr13:55421525-55421629
Coord A exon
chr13:55421243-55421408
Coord C2 exon
chr13:55420975-55421147
Length
166 bp
Sequences
Splice sites
3' ss Seq
AGCCATCTCTCTTTCTCTAGACC
3' ss Score
9
5' ss Seq
CCGGTTCGC
5' ss Score
2
Exon sequences
Seq C1 exon
CCTGCAGCATCAATCCGTGCCTTAATGGGGGCAGCTGCCTCCTCGTGGAGGACCACCCACTGTGCCGTTGCCCTACAGGCTACACTGGATATTTTTGCGACTTGG
Seq A exon
ACCTTTGGGCGACCTGCTATGAAGGCAGGGGGCTCAGCTACCGGGGCCAGGCTGGAACTACGCAATCGGGTGCGCCATGTCAGCGGTGGACCGTGGAGGCCACCTACCGGAACATGACTGAGAAGCAAGCGCTAAGCTGGGGCCTGGGCCACCACGCATTTTGCCG
Seq C2 exon
GAACCCAGATAATGACACACGTCCATGGTGCTTCGTCTGGAGTGGCGACAGGCTGAGCTGGGACTATTGCGGCCTGGAGCAGTGCCAGACGCCAACGTTTGCACCTCTAGTTGTCCCTGAGAGTCAGGAGGAGTCCCCGTCCCAGGCACCATCTCTGTCCCATGCACCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-'7-11,'7-9,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.339
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=83.3)
A:
PF0005113=Kringle=PU(63.3=89.3)
C2:
PF0005113=Kringle=PD(35.4=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCCGTGCCTTAATGGGGG
R:
GACAGAGATGGTGCCTGGGA
Band lengths:
254-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types