RnoEX0033746 @ rn6
Exon Skipping
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9740698-9741378:+
Coord C1 exon
chr17:9740698-9740802
Coord A exon
chr17:9740922-9741087
Coord C2 exon
chr17:9741182-9741378
Length
166 bp
Sequences
Splice sites
3' ss Seq
AGCCCTCTCTCTCTCTCTAGACC
3' ss Score
12.19
5' ss Seq
CCGGTTCGC
5' ss Score
2
Exon sequences
Seq C1 exon
TTTGCAGGGTCAATCCGTGCCTTAATGGAGGCACCTGCCTCCTCGTGGAGGACCACCGACTGTGCCACTGCCCTGCAGGCTATGCCGGACCTTTTTGCGACTTAG
Seq A exon
ACCTTAAGGCGACTTGCTACGAAGACAGGGGTCTCAGCTACCGGGGCCAGGCTAAAACTACTCTGTCGGGTGCACCATGTCAGCGGTGGGCCTCGGAGGCCACCTACCGGAACATGACTGAGACGCAAGCTCTAAGCTGGGGCCTGGGCCACCACGCATTCTGCCG
Seq C2 exon
GAACCCAGATAATGACACACGTCCATGGTGCTACGTCTGGAGTGGCGACAGGCTGAGCTGGGACTACTGCGACCTGGAACAGTGCCAGATGCCAACGCTCACATCTCCGGTTTCCCCTGAGAGTCACGACATGCTGAAGCCCCGGCCTCCCATATTGCAGATGCCTCAGTTCCCGTCTCTGTCCGATGCACTAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139-'7-13,'7-11,8-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.203
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.1)
A:
PF0005113=Kringle=PU(63.3=89.3)
C2:
PF0005113=Kringle=PD(35.4=41.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTCAATCCGTGCCTTAA
R:
GGCTTCAGCATGTCGTGACTC
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]