BtaEX6039927 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40258544-40259627:-
Coord C1 exon
chr7:40259491-40259627
Coord A exon
chr7:40259246-40259395
Coord C2 exon
chr7:40258544-40258689
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCCGCCCGGGTTAGCTC
3' ss Score
5.14
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
ACCCGCGCCGAAGGAGCTGACCGTGGTGCTCGGCCAGGACCGCCACAACCAGAGCTGTGAGCAGTGCCAGACGCTGGCAGTGCGGGACTACCGCCTGCACGAGGCCTTCTCGCCCATCACCTACCAGCACGACCTGG
Seq A exon
CTCTGGTGCGCCTGCAGGAGAGCGCGGACGGCTGCTGCGCGCACCCGTCGCCTTTCGTTCAGCCAGTGTGCCTGCCGAGTACCGCCGCCCGCCCCGCCGAATCCGAAGCCGCAGTCTGCGAGGTGGCCGGCTGGGGTCACCAGTTCGAGG
Seq C2 exon
GTGGGGAATATTCCAGCTTCCTGCAGGAGGCTCAGGTGCCACTCATCGACCCGCAGCGCTGCTCCGCCCCCGACGTGCACGGAGCAGCCTTCACCCAGGGCATGCTCTGCGCTGGCTTCCTCGAGGGCGGCACCGACGCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.3=100)
A:
PF0008921=Trypsin=FE(21.0=100)
C2:
PF0008921=Trypsin=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGCTGACCGTGGTG
R:
GAGGAAGCCAGCGCAGAG
Band lengths:
250-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]