RnoEX0033750 @ rn6
Exon Skipping
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9741182-9744087:+
Coord C1 exon
chr17:9741182-9741378
Coord A exon
chr17:9742089-9742229
Coord C2 exon
chr17:9743939-9744087
Length
141 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTTCTCTTGGGGTAGCTC
3' ss Score
6.85
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GAACCCAGATAATGACACACGTCCATGGTGCTACGTCTGGAGTGGCGACAGGCTGAGCTGGGACTACTGCGACCTGGAACAGTGCCAGATGCCAACGCTCACATCTCCGGTTTCCCCTGAGAGTCACGACATGCTGAAGCCCCGGCCTCCCATATTGCAGATGCCTCAGTTCCCGTCTCTGTCCGATGCACTAGACA
Seq A exon
CTCTGCTGCGCCTGCGGGGGAGGAAAAACAGCTGCGCGATCTTGTCGCCTCATGTCCAGCCGGTGTGTCTGCCCAGCAGCGCGGCCCCACCCTCTGAGACAGTGCTCTGCGAGGTGGCCGGCTGGGGTCATCAGTTCGAGG
Seq C2 exon
GGGCTGAAGAATACGCCACCTTTCTGCAGGAGGCACAGGTACCCTTCATCTCCCTGGATCGCTGCTCCAGCTCTAACGTGCACGGAGACGCCATCCTGCCTGGGATGCTTTGTGCTGGCTTCTTGGAGGGAGGCGCCGATGCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139_MULTIEX1-3/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(35.4=41.8)
A:
PF0008921=Trypsin=FE(19.9=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACACGTCCATGGTGCTAC
R:
CGATCCAGGGAGATGAAGGGT
Band lengths:
245-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]