RnoEX0033748 @ rn6
Exon Skipping
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9741182-9742229:+
Coord C1 exon
chr17:9741182-9741378
Coord A exon
chr17:9741481-9741703
Coord C2 exon
chr17:9742089-9742229
Length
223 bp
Sequences
Splice sites
3' ss Seq
GCCAATCTCTCCTTCCACAGACT
3' ss Score
9.69
5' ss Seq
ACGGCAAGC
5' ss Score
2.13
Exon sequences
Seq C1 exon
GAACCCAGATAATGACACACGTCCATGGTGCTACGTCTGGAGTGGCGACAGGCTGAGCTGGGACTACTGCGACCTGGAACAGTGCCAGATGCCAACGCTCACATCTCCGGTTTCCCCTGAGAGTCACGACATGCTGAAGCCCCGGCCTCCCATATTGCAGATGCCTCAGTTCCCGTCTCTGTCCGATGCACTAGACA
Seq A exon
ACTCGACCCGTAATCAGAATGTTGTGTCCAGGACCAGTACGGTGGTCTGCGGACAGAGGTTTCGCAAGCGACTGTCCTCGCTCAGGCGCGTGGTGGGCGGACTAGTGGCTCTGCCTGGATCGCATCCCTACATCGCTGCACTGTACTGGGGCGACAGCTTCTGCGCAGGCAGTCTCATCGACCCCTGCTGGGTGCTGACCGCTGCTCACTGCTTGCAGAAACG
Seq C2 exon
CTCTGCTGCGCCTGCGGGGGAGGAAAAACAGCTGCGCGATCTTGTCGCCTCATGTCCAGCCGGTGTGTCTGCCCAGCAGCGCGGCCCCACCCTCTGAGACAGTGCTCTGCGAGGTGGCCGGCTGGGGTCATCAGTTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139_MULTIEX1-1/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(35.4=41.8)
A:
PF0008921=Trypsin=PU(18.6=58.7)
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACACGTCCATGGTGCTAC
R:
AGAGCACTGTCTCAGAGGGTG
Band lengths:
292-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]