RnoINT0057483 @ rn6
Intron Retention
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9741182-9741703:+
Coord C1 exon
chr17:9741182-9741378
Coord A exon
chr17:9741379-9741480
Coord C2 exon
chr17:9741481-9741703
Length
102 bp
Sequences
Splice sites
5' ss Seq
ACAGTTAGG
5' ss Score
-4.03
3' ss Seq
GCCAATCTCTCCTTCCACAGACT
3' ss Score
9.69
Exon sequences
Seq C1 exon
GAACCCAGATAATGACACACGTCCATGGTGCTACGTCTGGAGTGGCGACAGGCTGAGCTGGGACTACTGCGACCTGGAACAGTGCCAGATGCCAACGCTCACATCTCCGGTTTCCCCTGAGAGTCACGACATGCTGAAGCCCCGGCCTCCCATATTGCAGATGCCTCAGTTCCCGTCTCTGTCCGATGCACTAGACA
Seq A exon
GTTAGGCGGAGGAGGGGTCCCGGCGCAGAGGACATGGGTCTCTTTTATTCTAGGCAGCCCGAGGTAGGTATCCGTGGCCTCAGCCAATCTCTCCTTCCACAG
Seq C2 exon
ACTCGACCCGTAATCAGAATGTTGTGTCCAGGACCAGTACGGTGGTCTGCGGACAGAGGTTTCGCAAGCGACTGTCCTCGCTCAGGCGCGTGGTGGGCGGACTAGTGGCTCTGCCTGGATCGCATCCCTACATCGCTGCACTGTACTGGGGCGACAGCTTCTGCGCAGGCAGTCTCATCGACCCCTGCTGGGTGCTGACCGCTGCTCACTGCTTGCAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139:ENSRNOT00000066586:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(35.4=41.8)
A:
NA
C2:
PF0008921=Trypsin=PU(18.6=58.7)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGCCAACGCTCACATCT
R:
CAGCGATGTAGGGATGCGATC
Band lengths:
250-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]