RnoEX0033749 @ rn6
Exon Skipping
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9741182-9742229:+
Coord C1 exon
chr17:9741182-9741378
Coord A exon
chr17:9741867-9742003
Coord C2 exon
chr17:9742089-9742229
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCCACCCGACCGCAGGCC
3' ss Score
8.99
5' ss Seq
TGGGTGGGG
5' ss Score
0.79
Exon sequences
Seq C1 exon
GAACCCAGATAATGACACACGTCCATGGTGCTACGTCTGGAGTGGCGACAGGCTGAGCTGGGACTACTGCGACCTGGAACAGTGCCAGATGCCAACGCTCACATCTCCGGTTTCCCCTGAGAGTCACGACATGCTGAAGCCCCGGCCTCCCATATTGCAGATGCCTCAGTTCCCGTCTCTGTCCGATGCACTAGACA
Seq A exon
GCCAGCGCCCGAGGAACTGACAGTGGTACTTGGTCAAGATCGCCATAACCAGAGCTGCGAGAGGTGCCAGACTCTGGCTGTGCACTCCTACCGCCTTCACGAGGGCTTCTCTTCCAAAACCTACCAGCATGATTTGG
Seq C2 exon
CTCTGCTGCGCCTGCGGGGGAGGAAAAACAGCTGCGCGATCTTGTCGCCTCATGTCCAGCCGGTGTGTCTGCCCAGCAGCGCGGCCCCACCCTCTGAGACAGTGCTCTGCGAGGTGGCCGGCTGGGGTCATCAGTTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139_MULTIEX1-2/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(35.4=41.8)
A:
PF0008921=Trypsin=FE(19.5=100)
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTACTGCGACCTGGAACA
R:
AGAGCACTGTCTCAGAGGGTG
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]