BtaEX6039926 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40259246-40260097:-
Coord C1 exon
chr7:40259878-40260097
Coord A exon
chr7:40259491-40259627
Coord C2 exon
chr7:40259246-40259395
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTCCCGATCCTGTCCCCAGACC
3' ss Score
10.96
5' ss Seq
TGGGTGCGT
5' ss Score
5.46
Exon sequences
Seq C1 exon
GCTGGTGCTCGCCGACTCCTCTGGCCAGCGGAGGCCCCGGGGGCTGTGGCCAGCGGCTCCGCAAATGGCTGTCCTCGCTGAACCGCGTCGTCGGAGGACTGGTGGCGCTCCCCGGGGCGCACCCCTACATCGCCGCGCTGTACTGGGACCAACATTTCTGCGCCGGCAGCCTCATCGCTCCCTGTTGGGTGCTGACTGCGGCTCACTGTCTGCAGAACCG
Seq A exon
ACCCGCGCCGAAGGAGCTGACCGTGGTGCTCGGCCAGGACCGCCACAACCAGAGCTGTGAGCAGTGCCAGACGCTGGCAGTGCGGGACTACCGCCTGCACGAGGCCTTCTCGCCCATCACCTACCAGCACGACCTGG
Seq C2 exon
CTCTGGTGCGCCTGCAGGAGAGCGCGGACGGCTGCTGCGCGCACCCGTCGCCTTTCGTTCAGCCAGTGTGCCTGCCGAGTACCGCCGCCCGCCCCGCCGAATCCGAAGCCGCAGTCTGCGAGGTGGCCGGCTGGGGTCACCAGTTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=59.5)
A:
PF0008921=Trypsin=FE(19.3=100)
C2:
PF0008921=Trypsin=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGGCTGTCCTCGCTGAA
R:
GGTACTCGGCAGGCACACT
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]