MmuEX6058599 @ mm9
Exon Skipping
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55521478-55522232:-
Coord C1 exon
chr13:55522010-55522232
Coord A exon
chr13:55521708-55521844
Coord C2 exon
chr13:55521478-55521621
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCACCCGACTGCAGGCC
3' ss Score
7.62
5' ss Seq
TGGGTGGGG
5' ss Score
0.79
Exon sequences
Seq C1 exon
ACTCGACCGATCATCAGACTTCTCTGTCCAAGACCAACACGATGGGCTGCGGACAGAGGTTCCGCAAGGGACTGTCCTCGTTCATGCGCGTGGTGGGCGGACTAGTGGCTCTGCCTGGGTCGCACCCCTACATCGCTGCACTGTACTGGGGTAACAACTTCTGCGCGGGCAGTCTCATCGCCCCCTGTTGGGTGCTGACCGCGGCTCACTGCCTGCAGAATCG
Seq A exon
GCCAGCGCCCGAGGAACTGACAGTGGTACTTGGTCAAGATCGCCACAACCAGAGCTGCGAGTGGTGCCAGACTCTGGCTGTGCGCTCCTACCGCCTTCACGAGGGCTTCTCCTCCATCACCTACCAGCACGACTTGG
Seq C2 exon
CTCTGCTGCGCCTGCAGGAAAGCAAAACCAACAGTTGCGCGATCCTGTCACCTCACGTTCAGCCTGTGTGTCTACCCAGCGGCGCGGCCCCACCCTCTGAGACAGTGCTCTGCGAGGTGGCCGGCTGGGGTCACCAGTTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=58.7)
A:
PF0008921=Trypsin=FE(19.4=100)
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAGACCAACACGATGGG
R:
GAACGTGAGGTGACAGGATCG
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: