MmuINT0060096 @ mm9
Intron Retention
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55521478-55521844:-
Coord C1 exon
chr13:55521708-55521844
Coord A exon
chr13:55521622-55521707
Coord C2 exon
chr13:55521478-55521621
Length
86 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGG
5' ss Score
0.79
3' ss Seq
ACCTTTGCCTCTCGGGGTAGCTC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GCCAGCGCCCGAGGAACTGACAGTGGTACTTGGTCAAGATCGCCACAACCAGAGCTGCGAGTGGTGCCAGACTCTGGCTGTGCGCTCCTACCGCCTTCACGAGGGCTTCTCCTCCATCACCTACCAGCACGACTTGG
Seq A exon
GTGGGGTGGCCCTACAGGGATAGGGAGAAAGGATGGCGGAGGGCTGGGGCCCTATGTCGCCATCTAACCTTTGCCTCTCGGGGTAG
Seq C2 exon
CTCTGCTGCGCCTGCAGGAAAGCAAAACCAACAGTTGCGCGATCCTGTCACCTCACGTTCAGCCTGTGTGTCTACCCAGCGGCGCGGCCCCACCCTCTGAGACAGTGCTCTGCGAGGTGGCCGGCTGGGGTCACCAGTTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-F12:NM_021489:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGGAACTGACAGTGGTA
R:
ATCGCGCAACTGTTGGTTTTG
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: