RnoINT0057473 @ rn6
Intron Retention
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9741867-9742229:+
Coord C1 exon
chr17:9741867-9742003
Coord A exon
chr17:9742004-9742088
Coord C2 exon
chr17:9742089-9742229
Length
85 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGG
5' ss Score
0.79
3' ss Seq
ACCCTTTTCTCTTGGGGTAGCTC
3' ss Score
6.85
Exon sequences
Seq C1 exon
GCCAGCGCCCGAGGAACTGACAGTGGTACTTGGTCAAGATCGCCATAACCAGAGCTGCGAGAGGTGCCAGACTCTGGCTGTGCACTCCTACCGCCTTCACGAGGGCTTCTCTTCCAAAACCTACCAGCATGATTTGG
Seq A exon
GTGGGGTAGCCCTACAGGGATAGGGAGAAAGGATGGGGAGGGTTGGGGGCCTATGTCGCCATCTAACCCTTTTCTCTTGGGGTAG
Seq C2 exon
CTCTGCTGCGCCTGCGGGGGAGGAAAAACAGCTGCGCGATCTTGTCGCCTCATGTCCAGCCGGTGTGTCTGCCCAGCAGCGCGGCCCCACCCTCTGAGACAGTGCTCTGCGAGGTGGCCGGCTGGGGTCATCAGTTCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139:ENSRNOT00000066586:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGGCTGTGCACTCCTA
R:
AGAGCACTGTCTCAGAGGGTG
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]