RnoINT0057472 @ rn6
Intron Retention
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9741481-9742003:+
Coord C1 exon
chr17:9741481-9741703
Coord A exon
chr17:9741704-9741866
Coord C2 exon
chr17:9741867-9742003
Length
163 bp
Sequences
Splice sites
5' ss Seq
ACGGCAAGC
5' ss Score
2.13
3' ss Seq
TGTCCTCCACCCGACCGCAGGCC
3' ss Score
8.99
Exon sequences
Seq C1 exon
ACTCGACCCGTAATCAGAATGTTGTGTCCAGGACCAGTACGGTGGTCTGCGGACAGAGGTTTCGCAAGCGACTGTCCTCGCTCAGGCGCGTGGTGGGCGGACTAGTGGCTCTGCCTGGATCGCATCCCTACATCGCTGCACTGTACTGGGGCGACAGCTTCTGCGCAGGCAGTCTCATCGACCCCTGCTGGGTGCTGACCGCTGCTCACTGCTTGCAGAAACG
Seq A exon
GCAAGCGCCACCCTCGGGGACCCCTAATCTGCTCCTACCCTACCTGCACCCTACTCTTCCCCCCATCCCCGCTATTCTTGAGCTCCCTCAAGGGGTTGAAAACAGGGGCGCCCCCAAAACATTTGTAGCCAGTCTGAACACACTGTCCTCCACCCGACCGCAG
Seq C2 exon
GCCAGCGCCCGAGGAACTGACAGTGGTACTTGGTCAAGATCGCCATAACCAGAGCTGCGAGAGGTGCCAGACTCTGGCTGTGCACTCCTACCGCCTTCACGAGGGCTTCTCTTCCAAAACCTACCAGCATGATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139:ENSRNOT00000066586:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=58.7)
A:
NA
C2:
PF0008921=Trypsin=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGTCCAGGACCAGTACG
R:
GGCGATCTTGACCAAGTACCA
Band lengths:
247-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]