BtaINT0058877 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40259491-40260097:-
Coord C1 exon
chr7:40259878-40260097
Coord A exon
chr7:40259628-40259877
Coord C2 exon
chr7:40259491-40259627
Length
250 bp
Sequences
Splice sites
5' ss Seq
CCGGCGAGT
5' ss Score
3.14
3' ss Seq
TTTCCCGATCCTGTCCCCAGACC
3' ss Score
10.96
Exon sequences
Seq C1 exon
GCTGGTGCTCGCCGACTCCTCTGGCCAGCGGAGGCCCCGGGGGCTGTGGCCAGCGGCTCCGCAAATGGCTGTCCTCGCTGAACCGCGTCGTCGGAGGACTGGTGGCGCTCCCCGGGGCGCACCCCTACATCGCCGCGCTGTACTGGGACCAACATTTCTGCGCCGGCAGCCTCATCGCTCCCTGTTGGGTGCTGACTGCGGCTCACTGTCTGCAGAACCG
Seq A exon
GCGAGTGTCCTCGAGCTCAGCTCCCAGCCCGGGACCTCCCTAGCGCCTCTCTCCTCTGCGCTCAGCTTCCGCGCAACACCCGAACTCGTGACCTACCTCTCTGCGGCCCCGCCCACCTTTGCCCCCTTCTCCCTTTCAGAGCTTCCCAGGAGGAAGCCGAAACCTATTTGGGGGTTCGGAAGAAGTGGGCTCCCGCAGGATGCCAGTAGCCCGCTCTGAGCGCTCTTCCTTTTCCCGATCCTGTCCCCAG
Seq C2 exon
ACCCGCGCCGAAGGAGCTGACCGTGGTGCTCGGCCAGGACCGCCACAACCAGAGCTGTGAGCAGTGCCAGACGCTGGCAGTGCGGGACTACCGCCTGCACGAGGCCTTCTCGCCCATCACCTACCAGCACGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872:ENSBTAT00000025122:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=59.5)
A:
NA
C2:
PF0008921=Trypsin=FE(19.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGGCTGTCCTCGCTGAA
R:
AGGTCGTGCTGGTAGGTGATG
Band lengths:
294-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]