BtaEX6039925 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40259491-40260407:-
Coord C1 exon
chr7:40260196-40260407
Coord A exon
chr7:40259878-40260097
Coord C2 exon
chr7:40259491-40259627
Length
220 bp
Sequences
Splice sites
3' ss Seq
AGCCTGGGCTCCTCCCACAGGCT
3' ss Score
7.56
5' ss Seq
CCGGCGAGT
5' ss Score
3.14
Exon sequences
Seq C1 exon
CGCCTCCACCCCACCTCGTGGTTACAGGAACCCCGACAACGACACCCGCCCTTGGTGCTTCATTTGGAAAGGCGACCGACTGAGCTGGAATTACTGCCGCCTGGCACCGTGCCAGGCCGCAGCTGGGCACGAGCACTTCCCCTTGCCCTCGCCATCGGCTTTGCAGAAACCTGAGTCCACGACCCAGACCCCGCTTCCATCCCTGACTTCAG
Seq A exon
GCTGGTGCTCGCCGACTCCTCTGGCCAGCGGAGGCCCCGGGGGCTGTGGCCAGCGGCTCCGCAAATGGCTGTCCTCGCTGAACCGCGTCGTCGGAGGACTGGTGGCGCTCCCCGGGGCGCACCCCTACATCGCCGCGCTGTACTGGGACCAACATTTCTGCGCCGGCAGCCTCATCGCTCCCTGTTGGGTGCTGACTGCGGCTCACTGTCTGCAGAACCG
Seq C2 exon
ACCCGCGCCGAAGGAGCTGACCGTGGTGCTCGGCCAGGACCGCCACAACCAGAGCTGTGAGCAGTGCCAGACGCTGGCAGTGCGGGACTACCGCCTGCACGAGGCCTTCTCGCCCATCACCTACCAGCACGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(41.1=51.4)
A:
PF0008921=Trypsin=PU(18.5=59.5)
C2:
PF0008921=Trypsin=FE(19.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTGGTGCTTCATTTGGA
R:
CTGGTAGGTGATGGGCGAGAA
Band lengths:
292-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]