BtaEX6040152 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046188 | ELA2
Description
Bos taurus elastase, neutrophil expressed (ELANE), mRNA. [Source:RefSeq mRNA;Acc:NM_001105653]
Coordinates
chr7:44988905-44990457:+
Coord C1 exon
chr7:44988905-44989046
Coord A exon
chr7:44989880-44990110
Coord C2 exon
chr7:44990265-44990457
Length
231 bp
Sequences
Splice sites
3' ss Seq
CCCACCACCCTCCTCTGCAGCTC
3' ss Score
8.31
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GAACTTTCGATCGGTGCGCGTGGTGCTGGGGGCGCATAACCTGCGGCGGCAGGAGCGAACCCGGCAGATGTTCAGAGTCCGGAGGGTCTTTGAAAACGGCTTCGACCCCTTGAGCCTGCAGAACGACGTCGTGGTTCTCCAG
Seq A exon
CTCAATAGGATGGCCACCCTCAATGCCAACGTGCAGGTGGCCCGGTTGCCTGCCCAGGACCAGGGCGTGGGCGAAGGTGTTCGGTGCGTGGCCATGGGCTGGGGCCGTCTGGGCACGAACCGGCCACCGCCCCAAATCCTGCAGCAGCTCAACGTGACCGTGGTGACTGGCCTCTGCCGCCCCACTAACGTGTGCACCCTGGTGCCACGCCGGCGTGCTGGCATCTGCTTT
Seq C2 exon
GGGGACTCCGGCGGGCCCCTGGTCTGCAACGGGCTGGTCCATGGGATCGATTCCTTCATCCGTGGGGGTTGCGGCTCTGGGGTCTTCCCAGACTCCTTTGCCTCTGTCGCCAAGTTTGCCAACTGGATCAACTCTATCATCCGGCGCTACAGTGACGACGATGGCCCCTCTCTCCACCCCAGGGACCCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046188-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.205
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.1=100)
A:
PF0008921=Trypsin=FE(35.7=100)
C2:
PF0008921=Trypsin=PD(19.7=60.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTTCGATCGGTGCGCG
R:
TCACTGTAGCGCCGGATGATA
Band lengths:
297-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]