RnoEX0031625 @ rn6
Exon Skipping
Gene
ENSRNOG00000033685 | Elane
Description
elastase, neutrophil expressed [Source:RGD Symbol;Acc:1307968]
Coordinates
chr7:12638322-12639517:-
Coord C1 exon
chr7:12639376-12639517
Coord A exon
chr7:12638723-12638956
Coord C2 exon
chr7:12638322-12638604
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTTCCCCACTGTAGCTC
3' ss Score
10.07
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
AAATTTCCAGTCAGTGCAAGTGGTGCTGGGAGCCCATGACCTGCGGCGACGGGAGCCCACTCGACAAATCTTCTCTGTGCAGCGCATCTTTGAGAACGGCTTTGACCCGTCACGTCTCCTGAATGACATTGTGATTATCCAG
Seq A exon
CTCAATGGCTCAGCTACCATTAACGCCAATGTGCAGGTGGCTGAGCTGCCTGCCCAGGGCCAGGGCGTGGGTAACAGAACTCCGTGTGTGGCCATGGGCTGGGGCAGGTTGGGCACAAACAGACCGTTGCCCAGTGTGCTCCAAGAGCTCAATGTGACAGTGGTGACTAACCTGTGCCGCCGACGTGTGAATGTATGCACTCTGGTGCCACGCCGGCAGGCAGGCATCTGCTTT
Seq C2 exon
GGGGACTCTGGTGGACCCTTGGTCTGTAACAACCTTGTCCAAGGCATTGACTCCTTCATCCGAGGAGGCTGTGGATCTGGATTCTACCCAGATGCCTTCGCCCCTGTGGCTGAGTTTGCAGACTGGATCAATTCCATTATCCGCAGCCATGATGACCGGCCACTTACCAATCCCAAAGACCGAGAGAGAGAGGGCAGGACCAACTAAGGCCCGTCCCCCCGTCCCCCACCATAGACCTCAGGCACCCTCCCCATTTTATCACAATAAAAGCAACCTTTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033685_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.235
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.0=100)
A:
PF0008921=Trypsin=FE(36.0=100)
C2:
PF0008921=Trypsin=PD(19.6=60.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGTCAGTGCAAGTGGTG
R:
GTAAGTGGCCGGTCATCATGG
Band lengths:
305-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]