BtaEX6040166 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45048569-45050756:-
Coord C1 exon
chr7:45050658-45050756
Coord A exon
chr7:45049225-45049402
Coord C2 exon
chr7:45048569-45048676
Length
178 bp
Sequences
Splice sites
3' ss Seq
GCCTGTCTTCCCTCCTGTAGGAG
3' ss Score
11.35
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GAGACTGGTTGGTCCTAGGAAGATGGCGGCGCCGGAGCTGGGGCGTTAGAGCGAATGCAGACGGCAGCCTCCTTCTCGGTGGGCGTACAGGCTGGTCCA
Seq A exon
GAGCTGGTGACCGTCCTCCCTGTGTGACCTTGGCAATTGGGAGCCATGGACCTGGCTTACATCTGTGAGTGGGAGAAATGGCCCAAGAGCACCCACTGCCCGTCGGGTCCCCTGGCCTGCACCTGGTCCTGCCGCAACCTCATCGCCTTCACCACAGACCTGCGCAGTGATGACCAAG
Seq C2 exon
ACCTGACCCGCATGATCCATATCCTGGACACTGAGCATCCCTGGGACGTGCACTCCATCCGCTCAGAGCACAGTGAGGCCATCACCTGCCTGGAGTGGGACCAGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217-'2-3,'2-2,6-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0040027=WD40=PU(56.4=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGGTTGGTCCTAGGAAGA
R:
CTGGTCCCACTCCAGGCAG
Band lengths:
202-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]