HsaEX0038602 @ hg38
Exon Skipping
Gene
ENSG00000175221 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr19:890137-893218:-
Coord C1 exon
chr19:893086-893218
Coord A exon
chr19:890963-891149
Coord C2 exon
chr19:890137-890244
Length
187 bp
Sequences
Splice sites
3' ss Seq
ACCACACCTCCCTCCCGCAGGAG
3' ss Score
10.92
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
Exon sequences
Seq C1 exon
CAGAAGTCTTTGGGAGGCGGCCCCACGCCTCAGGCGACTGGTTGTTACCGAGGAAGATGGCGGCGCCAGACCCGAGGCGCTAGGGAAGATCGCACCGCGGACGCCCGCTGAGCTTGGCGCACGGGCCGACCAG
Seq A exon
GAGCTGGTGACTGCCCTCATGTGTGATTTGCGGCGGCCAGCGGCAGGTGGGATGATGGACTTGGCCTACGTCTGTGAGTGGGAGAAATGGTCCAAGAGCACCCACTGCCCATCGGTGCCCCTGGCCTGCGCCTGGTCCTGCCGAAATCTCATCGCCTTCACCATGGACCTGCGCAGCGATGACCAGG
Seq C2 exon
ACCTGACCCGCATGATCCACATCCTGGACACGGAGCACCCCTGGGACCTGCACTCGATCCCCTCAGAGCACCACGAGGCCATCACCTGCCTGGAGTGGGACCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175221-'0-9,'0-2,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0040027=WD40=PU(56.4=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGTCTTTGGGAGGCGG
R:
CTGGTCCCACTCCAGGCAG
Band lengths:
237-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development