HsaEX6091400 @ hg38
Exon Skipping
Gene
ENSG00000175221 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr19:885770-893218:-
Coord C1 exon
chr19:893086-893218
Coord A exon
chr19:890137-890244
Coord C2 exon
chr19:885770-886201
Length
108 bp
Sequences
Splice sites
3' ss Seq
ACCATGCCCCGTCCCCACAGACC
3' ss Score
11.9
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CAGAAGTCTTTGGGAGGCGGCCCCACGCCTCAGGCGACTGGTTGTTACCGAGGAAGATGGCGGCGCCAGACCCGAGGCGCTAGGGAAGATCGCACCGCGGACGCCCGCTGAGCTTGGCGCACGGGCCGACCAG
Seq A exon
ACCTGACCCGCATGATCCACATCCTGGACACGGAGCACCCCTGGGACCTGCACTCGATCCCCTCAGAGCACCACGAGGCCATCACCTGCCTGGAGTGGGACCAGTCAG
Seq C2 exon
TCGGGCGCCTCCAGCTTCGGGGAGAAGTTCTCCCGAGTCAAGTTCTCACCGTCGCTCACGCTGTTCGGCGGCAAGCCCATGGAGGGCTGGATCGCGGTGACGGTCAGCGGCCTGGTCACCGTGTCCCTGCTGAAGCCCAGCGGGCAGGTGCTGACGTCCACCGAGAGCCTGTGCCGGCTGCGCGGCCGCGTGGCCCTGGCCGACATCGCCTTCACCGGCGGCGGCAACATCGTGGTGGCCACGGCGGACGGCAGCAGCGCGTCGCCCGTGCAGTTCTACAAGGTGTGCGTGAGCGTGGTGAGCGAGAAGTGCCGTATCGACACGGAGATCCTGCCCTCCCTGTTCATGCGCTGCACCACCGACCTCAACCGCAAGGACAAGTTTCCCGCCATCACCCACCTCAAGTTCCTGGCCCGGGACATGTCGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175221_MULTIEX1-2/15=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=PU(56.4=59.5)
C2:
PF116353=Med16=PU(11.3=97.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTACCGAGGAAGATGGCG
R:
TCTCGGTGGACGTCAGCAC
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains