DreEX0045788 @ danRer10
Exon Skipping
Gene
ENSDARG00000040779 | med16
Description
mediator complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-090306-4]
Coordinates
chr11:14047194-14050677:+
Coord C1 exon
chr11:14047194-14047243
Coord A exon
chr11:14047423-14047530
Coord C2 exon
chr11:14050508-14050677
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTCTGTTGCAGATC
3' ss Score
13.13
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AAACCTCATCGCTTTCACCACTGACCTGAAGAATGAGGAGGATGACAAAG
Seq A exon
ATCTCAGTCATATGATACACATCATTGACACTGATCACCCCTGGGATGTGTACTCCATCAATTCTGGTCACAATGAGATAATTTCCTGCCTAGAATGGGATCAGTCTG
Seq C2 exon
GTTCGAGGTTGTTGTCTGCTGATGGTGATGGTCAGATCAAGTGTTGGGGCATGACAGAGCACCTGGTGAACAGCTGGGAGTGCGCACAGAGCAGCTCAGTGGACGGAGACCCTATTGTAGCACTTTCATGGTTACACAATGGAGTCAAACTCGCCCTGCATGTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040779_MULTIEX1-1/6=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=PU(56.4=59.5)
C2:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(4.2=52.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATCGCTTTCACCACTG
R:
CTTTTCAACATGCAGGGCGAG
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]