GgaEX0002419 @ galGal3
Exon Skipping
Gene
ENSGALG00000001978 | MED16
Description
NA
Coordinates
chr28:2329813-2332365:-
Coord C1 exon
chr28:2330734-2332365
Coord A exon
chr28:2330495-2330602
Coord C2 exon
chr28:2329813-2329982
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCGTTTGTCGCTCCGTGCAGATC
3' ss Score
9.02
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
CTTTTAAAGGCTCATCCTGCAATCTCTTTCATGATCCAGTGACTCGCCATGATTTTCGCAAAAAGCCTTCCCTTTATAGCACACTACTTTGCACCCTTATTCTCCCAAATTGAAACGCTTTTCACCGCAGTATTTCCATATTACAAGCCTTTTCTTTGCCCGTTTCTGAACGCGAGGGCTCCTGGGTAGCTCTTTATGCAAATTTGGCGCCGGCGCTCAGGACCTCCGCCTGGGCTGTCGTCGGCAGTGCCTGAAGGAGCGGCGGCGCGGCGGGAGCAGCCCGCGGGGTCCTGGCACGGCTGCGCATGCGCGGTGGAGCTCTCCAGGCTCCGTTCCACTCCCCCCCCCGTTCCCGGGAGCAGCGATGGATTTGGCGTACGTGTGCGAGTGGGAGAAGCGGCCGAAGAGCGACCACTGCCCGCCCATCCCGCTGGTGTGCGCCTGGTCCTGCCGCAACCTCATCGCCTTCACCACCGACCTGCGGAACGAGGAGGAGCGCG
Seq A exon
ATCTCACCCACATGGTTCACATCATCGACACGGAACACCCGTGGGACGTCTACTCCGTGAACTCCGGCCACGTGGAAGCCATCACCTGCCTGGAGTGGGATCAGTCGG
Seq C2 exon
GCTCCAGGCTGCTCTCAGCGGATGCAGACGGCCACATCAAGTGCTGGAGCATGACCGACCACCTGGCCAACAGCTGGGAGAACACCATGGGCAGCATGGTGGAGGGAGACCCCGTGGTGGCCCTGTCCTGGCTGCACAACGGTGTGAAGCTGGCACTGCATGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001978_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040027=WD40=PU(56.4=59.5)
C2:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(4.2=52.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGATTTGGCGTACGTGT
R:
GGTCTCCCTCCACCATGCT
Band lengths:
249-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]