BtaEX0021848 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45048153-45049402:-
Coord C1 exon
chr7:45049225-45049402
Coord A exon
chr7:45048569-45048676
Coord C2 exon
chr7:45048153-45048322
Length
108 bp
Sequences
Splice sites
3' ss Seq
GACCTCACTGTCCCTTGCAGACC
3' ss Score
9.84
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GAGCTGGTGACCGTCCTCCCTGTGTGACCTTGGCAATTGGGAGCCATGGACCTGGCTTACATCTGTGAGTGGGAGAAATGGCCCAAGAGCACCCACTGCCCGTCGGGTCCCCTGGCCTGCACCTGGTCCTGCCGCAACCTCATCGCCTTCACCACAGACCTGCGCAGTGATGACCAAG
Seq A exon
ACCTGACCCGCATGATCCATATCCTGGACACTGAGCATCCCTGGGACGTGCACTCCATCCGCTCAGAGCACAGTGAGGCCATCACCTGCCTGGAGTGGGACCAGTCCG
Seq C2 exon
GCTCTCGTCTGCTGTCAGCTGATGCCGATGGGCAGATCAAGTGCTGGAGCATGGCTGACCACCTGGCCAACAGCTGGGAGAGCCCCGTGGGCAGCGTGGTGGAAGGGGACCCCATCGTGGCCTTGTCCTGGCTGCACAACGGCGTGAAACTGGCCCTGCACGTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217-'6-4,'6-3,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040027=WD40=PU(56.4=59.5)
C2:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(4.2=52.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGTGGGAGAAATGGCC
R:
CAGGACAAGGCCACGATGG
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development