HsaEX6091401 @ hg38
Exon Skipping
Gene
ENSG00000175221 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr19:873449-893218:-
Coord C1 exon
chr19:893086-893218
Coord A exon
chr19:885770-886201
Coord C2 exon
chr19:873449-873582
Length
432 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCCCTTCTCCACAGTCG
3' ss Score
11.27
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
CAGAAGTCTTTGGGAGGCGGCCCCACGCCTCAGGCGACTGGTTGTTACCGAGGAAGATGGCGGCGCCAGACCCGAGGCGCTAGGGAAGATCGCACCGCGGACGCCCGCTGAGCTTGGCGCACGGGCCGACCAG
Seq A exon
TCGGGCGCCTCCAGCTTCGGGGAGAAGTTCTCCCGAGTCAAGTTCTCACCGTCGCTCACGCTGTTCGGCGGCAAGCCCATGGAGGGCTGGATCGCGGTGACGGTCAGCGGCCTGGTCACCGTGTCCCTGCTGAAGCCCAGCGGGCAGGTGCTGACGTCCACCGAGAGCCTGTGCCGGCTGCGCGGCCGCGTGGCCCTGGCCGACATCGCCTTCACCGGCGGCGGCAACATCGTGGTGGCCACGGCGGACGGCAGCAGCGCGTCGCCCGTGCAGTTCTACAAGGTGTGCGTGAGCGTGGTGAGCGAGAAGTGCCGTATCGACACGGAGATCCTGCCCTCCCTGTTCATGCGCTGCACCACCGACCTCAACCGCAAGGACAAGTTTCCCGCCATCACCCACCTCAAGTTCCTGGCCCGGGACATGTCGGAGCAG
Seq C2 exon
ACATTGACAAGGTCATGATCAACCTCAAGACGGAGGAATTTGTGCTGGACATGAACACACTGCAGGCGCTGCAGCAGCTCTTGCAGTGGGTGGGCGACTTCGTGCTGTACCTGCTGGCCAGCCTACCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175221_MULTIEX1-4/15=C1-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF116353=Med16=FE(19.4=100)
C2:
PF116353=Med16=FE(10.8=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGTCTTTGGGAGGCGG
R:
GGTTGGGTAGGCTGGCCAG
Band lengths:
265-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains