GgaEX1035769 @ galGal3
Exon Skipping
Gene
ENSGALG00000001978 | MED16
Description
NA
Coordinates
chr28:2327713-2329982:-
Coord C1 exon
chr28:2329813-2329982
Coord A exon
chr28:2328710-2329141
Coord C2 exon
chr28:2327713-2327818
Length
432 bp
Sequences
Splice sites
3' ss Seq
TGCCAAATCTTCATTCCCAGTCT
3' ss Score
5.74
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTCCAGGCTGCTCTCAGCGGATGCAGACGGCCACATCAAGTGCTGGAGCATGACCGACCACCTGGCCAACAGCTGGGAGAACACCATGGGCAGCATGGTGGAGGGAGACCCCGTGGTGGCCCTGTCCTGGCTGCACAACGGTGTGAAGCTGGCACTGCATGTGGAGAAG
Seq A exon
TCTGGAGCATCGAACTTCGGGGAGAAGTTTTCCAGGGTCAAATTCTCTCCGTCGCTGACTCTGTTTGGTGGGAAGCCGATGGAGGGCTGGATTGCTGTGACCATCAGTGGTCTGGTGACAGTCTCCCTCCTCAAGCCCAACGGGCAGGTGCTGACATCCACGGAAAGCCTTTGCCGCCTCCGTTGCCGCGTTGCCTTGGCAGACGTCGCCTTCACTGGTGGGGGAAACATCGTGGTGGCCACTTCGGATGGCAGCAGTGCCTCCCCTGTCCAGTTCTACAAAGTCTGTGTGAGCGTGGTGAATGAGAAGTGCAAGATAGACACTGAAATCTTACCTTCCCTCTTCATGCGCTGCACCACCGACCCTGCCCGCAAGGACAAATACCCAGCAATCACTCACCTGAAATTCCTTGCTCGGGATATGTCAGAACAG
Seq C2 exon
GTGTTGCTTTGTGCTTCCAACCAGAACAACAGCATTGTGGAGTGCTGGTCTCTGCGGAAAGAGGGCTTACCTGTCAACAACATCTTCCAGCAAATCTCTCCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001978-'4-4,'4-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(4.2=52.6)
A:
PF116353=Med16=FE(19.9=100)
C2:
PF116353=Med16=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGGCTGCTCTCAG
R:
CCACAGGAGAGATTTGCTGGA
Band lengths:
276-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]